- Time Machine: make sure Time Machine is backing up. this usually happens every hour. you can check the Time Machine menu on the menubar if the backup is running or not. the OS accessing other disks could (and does) also affect the performance of the disk you are trying to measure.
- Spotlight indexing: mds, mdsync, md_stores, mdworker, mdworker_shared (anything from Metadata.framework) will affect the disk access performance.
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if other process uses the disk while you measure the disk performance, you get slower than expected performance.